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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1278
total RNA-seq
1159
ChIP-seq
421
ATAC-seq
315
single cell RNA-seq
209
DNase-seq
87
RNA microarray
63
snATAC-seq
42
pCHi-C
33
WGBS
26
Hi-C
21
RRBS
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1593
Transcription
1159
DNA binding
698
DNA accessibility
55
DNA methylation
26
3D chromatin structure
Target of assay
865
histone modification
864
histone
439
narrow histone mark
425
broad histone mark
222
control
77
transcription factor
38
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
1
chromatin remodeller
Date released
593
February, 2021
343
August, 2017
340
May, 2020
276
October, 2019
246
May, 2021
233
August, 2021
218
June, 2019
183
February, 2023
168
July, 2018
120
May, 2019
91
November, 2017
90
July, 2019
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
49
April, 2018
47
September, 2023
41
March, 2020
40
May, 2024
40
November, 2019
40
September, 2020
27
November, 2018
25
February, 2020
23
October, 2017
21
December, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
2471
bam
2340
bigWig
1328
tsv
1252
bed narrowPeak
759
fastq
643
bigBed narrowPeak
338
tagAlign
262
bed broadPeak
242
bed bed3+
225
bigBed broadPeak
157
txt
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3658
Homo sapiens
Biosample type
2734
tissue
933
primary cell
661
cell line
394
in vitro differentiated cells
10
stem cell
Organ
769
pancreas
583
connective tissue
487
adipose tissue
345
liver
341
epithelium
334
kidney
325
heart
282
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
94
musculature of body
75
artery
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3194
AMP
235
T1D
171
HPAP
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
2350
GRCh38
2338
hg19
Lab
2904
AMP-T2D consortium
291
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
145
inconsistent ontology term
40
audit script error
inconsistent control
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
small RNA-seq
audit.ERROR.category!
inconsistent control
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
3667 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
292
71
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
1
3
liver
167
118
20
1
2
1
3
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
+ See 176 more…
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
13
12
6
1
Langerhans cell
33
27
pancreatic beta cell
21
13
10
12
1
CD8-positive, alpha-beta T cell
4
33
2
1
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