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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
806
ChIP-seq
259
ATAC-seq
178
DNase-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
27
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
806
DNA binding
469
DNA accessibility
177
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
598
histone modification
597
histone
313
narrow histone mark
284
broad histone mark
158
control
52
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
234
October, 2019
195
August, 2017
163
June, 2019
130
August, 2021
115
May, 2019
93
February, 2021
91
February, 2023
82
November, 2017
80
April, 2019
October, 2018
66
May, 2022
50
May, 2020
47
September, 2023
40
May, 2024
30
July, 2019
26
November, 2018
23
October, 2017
21
December, 2017
21
November, 2019
19
April, 2020
15
May, 2023
12
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1790
bam
1684
bigWig
tsv
912
bed narrowPeak
489
bigBed narrowPeak
292
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1591
Homo sapiens
Biosample type
1600
tissue
818
primary cell
542
cell line
263
in vitro differentiated cells
6
stem cell
Organ
287
kidney
242
brain
202
heart
180
liver
179
pancreas
119
blood vessel
119
vasculature
115
limb
100
bone element
75
musculature of body
69
artery
67
connective tissue
66
adipose tissue
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1503
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
870
GRCh38
765
hg19
Lab
1249
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
small RNA-seq
audit.ERROR.category!
inconsistent control
files.file_type!
tsv
month_released!
October, 2018
BIOSAMPLE
ASSAY
1600 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
islet of Langerhans
71
67
1
31
7
3
1
4
1
4
liver
118
20
2
20
1
3
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
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