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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
534
ChIP-seq
172
DNase-seq
170
ATAC-seq
4
FAIRE-seq
Assay category
534
DNA binding
346
DNA accessibility
Target of assay
462
histone modification
461
histone
246
narrow histone mark
215
broad histone mark
72
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
160
June, 2019
130
October, 2019
65
April, 2019
65
August, 2017
64
August, 2021
58
November, 2017
54
May, 2019
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
28
February, 2023
27
May, 2020
20
November, 2019
17
November, 2018
9
October, 2017
8
February, 2021
6
January, 2019
5
July, 2019
3
December, 2018
2
March, 2020
Available data
1779
bam
1661
bigWig
1046
tsv
880
bed narrowPeak
496
bigBed narrowPeak
351
fastq
234
tagAlign
206
bed broadPeak
186
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
874
Homo sapiens
Biosample type
880
tissue
380
cell line
242
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
189
brain
173
heart
153
kidney
122
pancreas
113
liver
100
blood vessel
vasculature
92
limb
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
878
AMP
2
T1D
Genome assembly (visualization)
779
GRCh38
708
hg19
Lab
738
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
small RNA-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
vasculature
BIOSAMPLE
ASSAY
880 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
82
2
20
kidney
20
13
64
1
islet of Langerhans
19
1
37
1
left cardiac atrium
40
1
body of pancreas
26
4
4
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