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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
26
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
26
DNA binding
7
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
39
June, 2019
19
August, 2017
8
July, 2019
5
March, 2020
5
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
55
bigWig
49
bam
49
bed narrowPeak
41
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
10
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
81
Homo sapiens
Biosample type
72
tissue
9
primary cell
Organ
859
pancreas
728
liver
648
connective tissue
476
adipose tissue
469
epithelium
352
heart
338
kidney
210
vasculature
205
blood vessel
165
brain
159
bone element
135
artery
107
limb
81
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
60
hg19
46
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
assay_title!
small RNA-seq
audit.WARNING.category!
inconsistent assembly
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
81 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
1
4
1
1
1
muscle of leg
13
5
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
5
1
skeletal muscle cell
1
1
1
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