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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
347
ChIP-seq
Assay category
347
DNA binding
Target of assay
284
histone
284
histone modification
157
narrow histone mark
127
broad histone mark
58
control
5
transcription factor
Date released
84
May, 2021
71
August, 2017
67
November, 2017
50
May, 2020
49
October, 2019
14
October, 2017
8
February, 2021
4
August, 2021
Available data
3044
bam
2853
bigWig
1648
bed narrowPeak
1451
tsv
1178
fastq
994
bigBed narrowPeak
347
tagAlign
308
bed broadPeak
271
bigBed broadPeak
246
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
340
Homo sapiens
Biosample type
238
tissue
100
primary cell
in vitro differentiated cells
9
cell line
Organ
118
brain
75
liver
16
pancreas
15
musculature of body
8
adipose tissue
8
connective tissue
6
artery
6
blood vessel
6
heart
6
vasculature
4
epithelium
1
pituitary gland
Project
263
AMP
84
T1D
Genome assembly (visualization)
219
GRCh38
210
hg19
Lab
263
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
assay_title!
small RNA-seq
audit.WARNING.category!
inconsistent control read length
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
347 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
HepG2
1
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