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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
508
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
508
DNA binding
190
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
321
transcription factor
107
control
81
recombinant protein
79
histone modification
78
histone
50
RNA binding protein
49
narrow histone mark
29
broad histone mark
11
chromatin remodeller
other context
2
other post-translational modification
Date released
292
November, 2017
194
May, 2020
53
August, 2017
48
December, 2017
48
November, 2018
40
May, 2022
35
August, 2021
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
634
bam
576
bigWig
421
fastq
400
bed narrowPeak
317
bigBed narrowPeak
171
tsv
75
tagAlign
49
bed broadPeak
49
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
744
Homo sapiens
Biosample type
373
cell line
357
tissue
in vitro differentiated cells
14
primary cell
Organ
932
pancreas
744
liver
584
connective tissue
496
epithelium
487
adipose tissue
391
heart
353
kidney
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
22
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
744
AMP
Genome assembly (visualization)
579
hg19
489
GRCh38
Lab
673
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
8
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
assay_title!
small RNA-seq
audit.WARNING.category!
inconsistent control read length
biosample_type!
in vitro differentiated cells
target.investigated_as!
other context
BIOSAMPLE
ASSAY
744 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
350
14
1
1
2
2
2
1
tissue
liver
144
167
20
2
3
1
1
1
1
right lobe of liver
10
3
1
2
1
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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