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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
WGBS
5
ATAC-seq
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
398
Transcription
73
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
9
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
November, 2019
1
October, 2017
1
October, 2019
Available data
438
bam
422
bigWig
398
tsv
44
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
486
Homo sapiens
Biosample type
485
tissue
1
in vitro differentiated cells
1
primary cell
Organ
819
pancreas
761
liver
672
connective tissue
487
adipose tissue
477
epithelium
389
heart
353
kidney
282
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
32
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
487
AMP
Genome assembly (visualization)
422
hg19
420
GRCh38
Lab
487
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
small RNA-seq
audit.WARNING.category!
inconsistent control read length
month_released!
May, 2021
November, 2019
BIOSAMPLE
ASSAY
487 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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