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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
6
Hi-C
Assay category
8
Transcription
6
3D chromatin structure
Date released
6
February, 2021
4
July, 2019
1
March, 2019
1
November, 2018
1
October, 2019
1
September, 2018
Available data
3374
bam
3151
bigWig
1817
bed narrowPeak
1582
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
14
Homo sapiens
Biosample type
7
tissue
6
primary cell
1
cell line
Organ
5
kidney
3
brain
2
blood vessel
2
epithelium
2
liver
2
pancreas
2
vasculature
1
connective tissue
Project
14
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
13
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
5
audit script error
Audit category:
1
inconsistent assembly
assay_title!
small RNA-seq
award.project!
LungMap
BIOSAMPLE
ASSAY
14 results
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Clear Filters
single cell RNA-seq
Hi-C
tissue
kidney
5
islet of Langerhans
1
liver
1
primary cell
pancreatic cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
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