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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
59
total RNA-seq
31
DNase-seq
10
RRBS
6
Hi-C
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
194
DNA binding
183
DNA accessibility
161
Transcription
11
DNA methylation
6
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
58
August, 2017
55
June, 2019
55
May, 2021
48
July, 2018
43
April, 2018
34
October, 2019
29
July, 2019
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
426
bam
420
bigWig
239
fastq
210
bed narrowPeak
166
tsv
108
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
556
Homo sapiens
Biosample type
2662
tissue
620
cell line
556
primary cell
391
in vitro differentiated cells
8
stem cell
Organ
254
epithelium
194
pancreas
37
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
13
heart
13
musculature of body
5
eye
2
artery
1
adipose tissue
1
pericardium
Project
556
AMP
321
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
442
hg19
342
GRCh38
Lab
521
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
49
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
small RNA-seq
month_released!
October, 2022
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
556 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
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