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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
159
ChIP-seq
22
ATAC-seq
4
WGBS
small RNA-seq
2
Hi-C
2
RRBS
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
176
Transcription
159
DNA binding
23
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
73
histone modification
72
histone
47
control
46
narrow histone mark
39
transcription factor
26
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
7
July, 2019
7
October, 2019
5
December, 2019
4
August, 2021
4
November, 2018
3
March, 2020
1
February, 2020
1
February, 2021
Available data
297
bam
273
bigWig
156
tsv
119
bed narrowPeak
83
fastq
74
tagAlign
51
bigBed narrowPeak
12
bed bed3+
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
367
Homo sapiens
Biosample type
355
tissue
cell line
in vitro differentiated cells
12
primary cell
Organ
829
pancreas
575
connective tissue
484
adipose tissue
399
epithelium
367
liver
295
heart
256
kidney
235
brain
159
bone element
153
vasculature
151
blood vessel
86
limb
71
artery
57
eye
48
musculature of body
41
nerve
24
spleen
20
lung
18
vein
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
367
AMP
Genome assembly (visualization)
273
hg19
241
GRCh38
Lab
327
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_title!
small RNA-seq
biosample_type!
cell line
in vitro differentiated cells
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
367 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
RRBS
DNase-seq
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
3
1
1
1
1
right lobe of liver
3
10
1
1
1
primary cell
hepatocyte
5
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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