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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
17
total RNA-seq
4
ATAC-seq
small RNA-seq
2
pCHi-C
1
RRBS
Assay category
121
DNA binding
17
Transcription
4
DNA accessibility
1
DNA methylation
Target of assay
96
histone
96
histone modification
84
narrow histone mark
25
control
12
broad histone mark
Date released
86
October, 2019
25
November, 2017
12
February, 2020
10
October, 2017
6
July, 2019
3
May, 2019
2
March, 2020
1
February, 2023
Available data
222
bam
198
bigWig
192
bed narrowPeak
118
tagAlign
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
19
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
145
Homo sapiens
Biosample type
145
tissue
primary cell
Organ
630
connective tissue
529
pancreas
477
adipose tissue
417
liver
291
heart
224
kidney
158
bone element
145
brain
137
blood vessel
137
vasculature
114
artery
103
epithelium
53
eye
43
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
12
spleen
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
145
AMP
Genome assembly (visualization)
85
hg19
84
GRCh38
Lab
145
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
small RNA-seq
biosample_type!
primary cell
files.file_type!
bigBed narrowPeak
csv
BIOSAMPLE
ASSAY
145 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
RRBS
tissue
brain
14
1
1
1
cingulate gyrus
8
layer of hippocampus
7
substantia nigra
5
1
cerebellum (Hemisphere)
3
1
1
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