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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
65
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
pCHi-C
small RNA-seq
1
RNA microarray
Assay category
397
Transcription
65
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
25
histone
25
histone modification
23
control
17
transcription factor
16
broad histone mark
9
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
49
August, 2017
23
October, 2018
8
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
438
bam
421
bigWig
397
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
478
Homo sapiens
Biosample type
478
tissue
1
in vitro differentiated cells
primary cell
Organ
692
liver
621
connective tissue
579
pancreas
479
adipose tissue
373
heart
317
kidney
193
blood vessel
193
vasculature
158
bone element
143
brain
133
artery
122
limb
115
epithelium
66
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
479
AMP
Genome assembly (visualization)
421
hg19
420
GRCh38
Lab
479
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
small RNA-seq
biosample_type!
primary cell
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
479 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
28
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
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