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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
31
ChIP-seq
29
ATAC-seq
24
total RNA-seq
6
Hi-C
5
pCHi-C
4
RRBS
1
WGBS
1
single cell RNA-seq
small RNA-seq
Assay category
64
DNA accessibility
31
DNA binding
25
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
4
control
Date released
35
June, 2019
31
February, 2023
26
August, 2017
21
October, 2019
7
May, 2019
6
July, 2019
5
March, 2020
3
February, 2020
1
January, 2018
1
May, 2022
Available data
81
bed narrowPeak
59
bigWig
48
bed broadPeak
46
bam
41
bigBed narrowPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
11
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
txt
Organism
136
Homo sapiens
Biosample type
136
tissue
primary cell
Organ
774
liver
643
connective tissue
592
pancreas
487
adipose tissue
379
heart
261
brain
255
kidney
199
blood vessel
199
vasculature
139
artery
122
limb
118
epithelium
80
musculature of body
70
bone element
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
89
hg19
44
GRCh38
Lab
136
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
small RNA-seq
biosample_type!
primary cell
files.file_type!
txt
BIOSAMPLE
ASSAY
136 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
1
4
1
islet of Langerhans
2
1
14
4
muscle of leg
13
7
1
retina
3
15
3
muscle of arm
17
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