Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
50
ChIP-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
Assay category
181
DNA accessibility
50
DNA binding
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
19
transcription factor
11
broad histone mark
11
narrow histone mark
9
control
2
RNA binding protein
Date released
163
June, 2019
33
August, 2017
15
December, 2017
9
November, 2018
6
October, 2019
4
February, 2023
2
August, 2021
2
September, 2017
1
February, 2021
May, 2022
Available data
2743
bam
2520
bigWig
1484
bed narrowPeak
1314
tsv
933
bigBed narrowPeak
925
fastq
298
tagAlign
273
bed broadPeak
236
bigBed broadPeak
235
bed bed3+
154
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
235
Homo sapiens
Biosample type
204
tissue
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
68
kidney
36
limb
32
musculature of body
29
pancreas
27
brain
27
heart
19
connective tissue
18
ureter
7
liver
6
adipose tissue
5
blood vessel
5
vasculature
4
artery
3
embryo
3
eye
2
nerve
1
spleen
Project
235
AMP
Genome assembly (visualization)
228
GRCh38
219
hg19
Lab
233
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
assay_title!
small RNA-seq
biosample_type!
primary cell
lab.title!
Maike Sander, UCSD
month_released!
May, 2022
BIOSAMPLE
ASSAY
235 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 41 more…
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
Download