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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
342
ChIP-seq
Assay category
342
DNA binding
Target of assay
720
histone modification
719
histone
498
transcription factor
376
narrow histone mark
342
broad histone mark
294
control
100
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
93
August, 2017
56
May, 2019
50
November, 2017
43
October, 2019
April, 2019
20
May, 2024
19
October, 2018
15
December, 2017
10
May, 2021
10
October, 2017
8
August, 2021
8
February, 2018
6
November, 2019
4
January, 2019
Available data
272
bigWig
271
bed narrowPeak
241
bam
184
bigBed narrowPeak
96
tagAlign
85
fastq
28
bed broadPeak
11
bed bed3+
8
bigBed broadPeak
Organism
338
Homo sapiens
Biosample type
266
tissue
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
70
brain
51
pancreas
41
liver
40
connective tissue
36
blood vessel
36
vasculature
34
limb
30
heart
20
adipose tissue
16
musculature of body
16
nerve
14
artery
13
epithelium
4
embryo
4
spleen
Project
342
AMP
Genome assembly (visualization)
259
GRCh38
216
hg19
Lab
311
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
15
inconsistent control read length
1
inconsistent assembly
assay_title!
small RNA-seq
biosample_type!
primary cell
month_released!
April, 2019
January, 2018
BIOSAMPLE
ASSAY
342 results
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Clear Filters
ChIP-seq
tissue
liver
22
left cardiac atrium
20
subcutaneous abdominal adipose tissue
20
tibial nerve
16
islet of Langerhans
14
+ See 23 more…
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
+ See 5 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
4
stem cell
hESC
1
See all biosamples
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