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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
102
ChIP-seq
23
ATAC-seq
6
WGBS
3
pCHi-C
2
Capture-C
2
DNase-seq
small RNA-seq
1
RNA microarray
Assay category
464
Transcription
102
DNA binding
25
DNA accessibility
6
DNA methylation
Target of assay
70
histone
70
histone modification
40
broad histone mark
transcription factor
32
control
29
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
452
February, 2021
91
August, 2017
18
October, 2018
14
February, 2023
8
July, 2019
5
August, 2021
4
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
June, 2019
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
515
bam
496
bigWig
461
tsv
59
fastq
35
bed narrowPeak
22
tagAlign
8
bed bed3+
7
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
602
Homo sapiens
Biosample type
527
tissue
75
in vitro differentiated cells
primary cell
1
stem cell
Organ
603
connective tissue
575
pancreas
469
adipose tissue
436
liver
336
heart
241
kidney
236
brain
189
blood vessel
189
vasculature
158
bone element
132
artery
114
epithelium
90
limb
53
eye
49
musculature of body
43
nerve
34
embryo
20
lung
19
spleen
16
skeleton
10
blood
10
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
603
AMP
Genome assembly (visualization)
513
hg19
492
GRCh38
Lab
599
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
assay_title!
small RNA-seq
biosample_type!
primary cell
month_released!
June, 2019
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
603 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
Capture-C
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
1
+ See 3 more…
in vitro differentiated cells
adipocyte
5
45
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
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