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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
544
ChIP-seq
184
total RNA-seq
23
ATAC-seq
4
WGBS
3
Hi-C
3
pCHi-C
small RNA-seq
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
544
DNA binding
185
Transcription
24
DNA accessibility
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
328
transcription factor
110
control
101
histone modification
100
histone
66
recombinant protein
59
narrow histone mark
47
RNA binding protein
41
broad histone mark
26
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
November, 2018
63
December, 2017
54
August, 2017
40
May, 2022
31
August, 2021
28
December, 2018
23
January, 2019
6
October, 2019
5
July, 2019
3
February, 2021
3
March, 2020
1
February, 2020
1
January, 2018
Available data
658
bam
599
bigWig
457
fastq
426
bed narrowPeak
347
bigBed narrowPeak
166
tsv
82
tagAlign
58
bed broadPeak
58
bigBed broadPeak
4
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
767
Homo sapiens
Biosample type
401
cell line
351
tissue
primary cell
15
in vitro differentiated cells
Organ
721
liver
642
connective tissue
591
pancreas
486
adipose tissue
379
heart
317
kidney
259
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
81
musculature of body
56
eye
46
blood
46
bodily fluid
43
nerve
37
embryo
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
767
AMP
Genome assembly (visualization)
603
hg19
507
GRCh38
Lab
696
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
28
inconsistent control
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
assay_title!
small RNA-seq
biosample_type!
primary cell
month_released!
November, 2018
BIOSAMPLE
ASSAY
767 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
333
14
1
2
2
2
1
GM12878
45
1
tissue
liver
141
167
20
3
1
1
1
1
right lobe of liver
10
3
1
1
1
in vitro differentiated cells
hepatocyte
15
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