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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
540
ChIP-seq
184
total RNA-seq
23
ATAC-seq
5
WGBS
4
DNase-seq
3
Hi-C
3
pCHi-C
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
540
DNA binding
185
Transcription
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
389
transcription factor
113
control
101
histone modification
100
histone
82
recombinant protein
RNA binding protein
59
narrow histone mark
41
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
281
November, 2017
194
May, 2020
59
December, 2017
54
August, 2017
47
November, 2018
40
May, 2022
30
August, 2021
26
December, 2018
17
January, 2019
6
October, 2019
5
July, 2019
3
February, 2021
3
March, 2020
1
February, 2020
1
January, 2018
Available data
659
bam
597
bigWig
458
fastq
423
bed narrowPeak
345
bigBed narrowPeak
166
tsv
82
tagAlign
57
bed broadPeak
57
bigBed broadPeak
7
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
2
tar
1
bed bed3
1
csv
1
vcf
Organism
767
Homo sapiens
Biosample type
398
cell line
356
tissue
primary cell
13
in vitro differentiated cells
Organ
716
liver
634
connective tissue
589
pancreas
482
adipose tissue
369
heart
316
kidney
261
brain
196
blood vessel
196
vasculature
158
bone element
138
artery
122
limb
115
epithelium
81
musculature of body
56
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
767
AMP
Genome assembly (visualization)
599
hg19
510
GRCh38
Lab
697
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
28
inconsistent control
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
21
inconsistent control read length
5
inconsistent control run_type
assay_title!
small RNA-seq
biosample_type!
primary cell
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
767 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
324
14
1
1
2
2
2
1
GM12878
50
1
tissue
liver
144
167
20
3
2
1
1
1
1
right lobe of liver
9
3
1
1
2
in vitro differentiated cells
hepatocyte
13
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