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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
10
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
27
DNA accessibility
10
3D chromatin structure
2
Transcription
Date released
24
June, 2019
4
July, 2019
August, 2021
3
October, 2019
3
October, 2022
2
May, 2021
1
February, 2021
1
March, 2020
1
March, 2023
1
November, 2020
Available data
608
bigWig
603
bam
409
fastq
292
bed narrowPeak
268
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
96
tagAlign
49
bed broadPeak
49
bigBed broadPeak
34
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
40
Homo sapiens
Biosample type
215
tissue
40
primary cell
27
in vitro differentiated cells
4
cell line
3
stem cell
Organ
23
epithelium
10
kidney
10
vasculature
8
blood vessel
8
brain
8
connective tissue
4
vein
3
heart
3
liver
3
pancreas
1
eye
1
musculature of body
Project
36
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
32
hg19
28
GRCh38
Lab
34
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Kyle Gaulton, UCSD
1
ITG
Audit category:
4
audit script error
3
inconsistent ontology term
assay_title!
small RNA-seq
month_released!
August, 2021
BIOSAMPLE
ASSAY
40 results
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DNase-seq
Hi-C
total RNA-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
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