Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
57
single cell RNA-seq
12
ATAC-seq
6
WGBS
small RNA-seq
Assay category
207
Transcription
12
DNA accessibility
6
DNA methylation
Target of assay
3
control
Date released
52
May, 2021
48
July, 2018
45
May, 2020
April, 2018
26
September, 2018
16
July, 2019
12
February, 2023
7
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
Available data
568
bigWig
564
bam
371
fastq
295
bed narrowPeak
225
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
225
Homo sapiens
Biosample type
1054
tissue
225
primary cell
131
in vitro differentiated cells
119
cell line
4
stem cell
Organ
83
epithelium
75
pancreas
12
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
1
musculature of body
1
pericardium
Project
123
AMP
96
T1D
6
HPAP
Genome assembly (visualization)
207
GRCh38
207
hg19
Lab
123
AMP-T2D consortium
96
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
17
inconsistent ontology term
assay_title!
small RNA-seq
month_released!
April, 2018
BIOSAMPLE
ASSAY
225 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
primary cell
monocyte
53
pancreatic alpha cell
10
9
6
pancreatic beta cell
10
9
pancreatic acinar cell
4
6
pancreatic ductal cell
4
4
+ See 59 more…
See all biosamples
Download