Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
92
ChIP-seq
72
ATAC-seq
70
single cell RNA-seq
47
WGBS
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
163
Transcription
92
DNA binding
91
DNA accessibility
53
DNA methylation
7
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
13
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
242
bam
238
fastq
231
bigWig
116
tsv
106
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
406
Homo sapiens
Biosample type
406
primary cell
73
cell line
24
in vitro differentiated cells
15
tissue
Organ
406
epithelium
346
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
13
heart
13
musculature of body
8
blood
8
bodily fluid
5
eye
2
artery
1
adipose tissue
1
bone element
1
bone marrow
1
pericardium
Project
254
AMP
152
HPAP
Genome assembly (visualization)
227
hg19
225
GRCh38
Lab
254
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
small RNA-seq
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
ovary
BIOSAMPLE
ASSAY
406 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
35
12
31
1
pancreatic beta cell
21
13
23
12
16
1
pancreatic acinar cell
4
8
9
12
1
pancreatic ductal cell
4
13
4
10
endothelial cell of umbilical vein
17
2
2
1
+ See 19 more…
See all biosamples
Download