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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
188
ATAC-seq
184
single cell RNA-seq
171
total RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
355
Transcription
276
DNA accessibility
247
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
134
May, 2022
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
47
June, 2019
46
August, 2017
43
April, 2018
31
October, 2019
26
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
601
bigWig
575
bam
317
fastq
295
bed narrowPeak
253
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
98
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
963
Homo sapiens
Biosample type
2478
tissue
963
primary cell
573
cell line
341
in vitro differentiated cells
9
stem cell
Organ
348
epithelium
297
pancreas
35
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
13
liver
11
heart
11
musculature of body
8
blood
8
bodily fluid
4
eye
2
artery
1
adipose tissue
1
bone element
1
bone marrow
1
pericardium
Project
510
AMP
248
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
616
hg19
531
GRCh38
Lab
478
AMP-T2D consortium
248
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
1
ITG
Audit category:
43
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
small RNA-seq
month_released!
February, 2023
organ_slims!
lymph node
target.investigated_as!
control
BIOSAMPLE
ASSAY
963 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
7
35
12
25
31
1
pancreatic beta cell
7
23
12
11
16
1
CD8-positive, alpha-beta T cell
30
2
4
1
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