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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
total RNA-seq
74
single cell RNA-seq
71
ATAC-seq
70
ChIP-seq
47
WGBS
3
Hi-C
small RNA-seq
Assay category
156
Transcription
71
DNA accessibility
70
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
80
May, 2022
72
September, 2018
41
August, 2017
37
February, 2023
37
July, 2018
33
April, 2018
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
July, 2019
1
June, 2018
Available data
258
fastq
195
bam
193
bigWig
109
tsv
80
zippedFastqFolder
68
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
347
Homo sapiens
Biosample type
987
tissue
347
primary cell
89
cell line
4
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
13
heart
13
musculature of body
8
blood
8
bodily fluid
5
eye
2
artery
1
adipose tissue
1
bone element
1
bone marrow
1
pericardium
Project
195
AMP
152
HPAP
Genome assembly (visualization)
193
GRCh38
186
hg19
Lab
195
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
small RNA-seq
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
347 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
52
12
35
13
31
1
pancreatic beta cell
21
12
23
13
16
1
pancreatic acinar cell
4
12
9
8
1
pancreatic ductal cell
4
10
4
13
pancreatic endocrine cell
23
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