Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
561
ChIP-seq
260
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1205
Transcription
561
DNA binding
293
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
615
histone
narrow histone mark
297
broad histone mark
184
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
229
August, 2021
214
August, 2017
166
May, 2020
120
July, 2018
109
October, 2019
95
February, 2023
82
May, 2019
65
May, 2022
63
October, 2018
61
July, 2019
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
5
January, 2019
5
March, 2019
4
November, 2020
4
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1648
bam
1488
bigWig
1060
tsv
718
bed narrowPeak
453
bigBed narrowPeak
349
fastq
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
157
txt
128
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
csv
5
bed bed3
1
bedpe
Organism
2225
Homo sapiens
Biosample type
2232
tissue
934
primary cell
640
cell line
318
in vitro differentiated cells
7
stem cell
Organ
526
connective tissue
468
adipose tissue
450
pancreas
307
liver
247
heart
215
kidney
158
bone element
120
brain
110
blood vessel
110
vasculature
71
limb
63
artery
51
eye
39
musculature of body
33
nerve
22
spleen
20
lung
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2137
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1394
GRCh38
1317
hg19
Lab
1895
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
3
audit script error
Audit category:
11
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
assay_title!
small RNA-seq
files.file_type!
bed bed3+
csv
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2232 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
19
68
6
7
4
3
1
1
4
1
adipose tissue
382
1
3
3
1
liver
167
100
20
3
1
1
1
kidney
49
17
75
59
6
1
1
1
bone element
84
+ See 99 more…
See all biosamples
Download