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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
332
ChIP-seq
93
single cell RNA-seq
43
ATAC-seq
32
total RNA-seq
8
WGBS
5
pCHi-C
small RNA-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
332
DNA binding
125
Transcription
44
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
279
histone
279
histone modification
152
narrow histone mark
127
broad histone mark
41
control
12
transcription factor
10
RNA binding protein
Date released
94
October, 2019
92
August, 2021
82
November, 2017
57
April, 2019
49
May, 2019
40
May, 2024
37
February, 2023
26
July, 2019
16
October, 2017
15
February, 2020
9
March, 2020
2
May, 2021
Available data
365
bed narrowPeak
354
bigWig
353
bam
204
bigBed narrowPeak
129
tsv
118
tagAlign
63
bed broadPeak
bed bed3+
54
bigBed broadPeak
12
fastq
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
1
bed bed3
1
tagAlign bed3+
Organism
519
Homo sapiens
Biosample type
519
tissue
66
cell line
23
primary cell
1
in vitro differentiated cells
Organ
539
connective tissue
480
adipose tissue
476
pancreas
352
liver
285
heart
234
brain
230
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
48
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
519
AMP
Genome assembly (visualization)
335
GRCh38
209
hg19
Lab
479
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
small RNA-seq
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
519 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
tissue
heart left ventricle
35
18
2
3
4
1
1
1
left cardiac atrium
40
18
coronary artery
5
36
1
heart right ventricle
13
17
1
2
1
1
right cardiac atrium
6
18
1
1
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