Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1029
total RNA-seq
701
ChIP-seq
223
ATAC-seq
178
single cell RNA-seq
174
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
small RNA-seq
11
RRBS
5
Hi-C
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
1207
Transcription
701
DNA binding
429
DNA accessibility
38
DNA methylation
5
3D chromatin structure
Target of assay
608
histone modification
607
histone
318
narrow histone mark
289
broad histone mark
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
255
August, 2017
226
August, 2021
193
October, 2019
170
May, 2020
161
June, 2019
120
July, 2018
90
May, 2019
70
November, 2017
66
April, 2019
66
May, 2022
60
February, 2023
60
July, 2019
47
September, 2023
45
October, 2018
40
May, 2021
40
May, 2024
39
November, 2019
36
December, 2017
33
March, 2020
23
February, 2020
23
November, 2018
20
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
6
April, 2018
6
January, 2019
4
March, 2019
3
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1729
bigWig
1697
bam
1056
tsv
922
bed narrowPeak
536
bigBed narrowPeak
310
fastq
209
bed broadPeak
198
bed bed3+
186
tagAlign
172
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2489
Homo sapiens
Biosample type
2497
tissue
1043
primary cell
513
cell line
353
in vitro differentiated cells
9
stem cell
Organ
521
connective tissue
471
pancreas
462
adipose tissue
311
liver
293
heart
291
kidney
236
brain
158
bone element
116
blood vessel
116
vasculature
105
limb
75
musculature of body
artery
56
eye
32
nerve
20
lung
18
ureter
17
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2400
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1778
GRCh38
1698
hg19
Lab
2149
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
small RNA-seq
files.file_type!
hic
organ_slims!
artery
target.investigated_as!
control
BIOSAMPLE
ASSAY
2497 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
FAIRE-seq
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
292
58
68
6
1
7
4
1
1
1
2
adipose tissue
382
1
3
3
1
liver
167
102
20
1
2
3
1
1
kidney
49
21
75
64
13
6
1
1
bone element
84
+ See 173 more…
See all biosamples
Download