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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
59
single cell RNA-seq
49
total RNA-seq
27
ChIP-seq
6
snATAC-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
150
DNA accessibility
108
Transcription
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
4
October, 2019
2
July, 2019
1
December, 2019
Available data
153
bed narrowPeak
97
bam
90
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
287
Homo sapiens
Biosample type
287
tissue
30
primary cell
13
cell line
Organ
287
kidney
230
pancreas
207
liver
202
heart
160
brain
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
240
AMP
47
KPMP
Genome assembly (visualization)
163
GRCh38
90
hg19
Lab
142
Katalin Susztak, Upenn
98
AMP-T2D consortium
47
KPMP
assay_title!
small RNA-seq
files.file_type!
tsv
month_released!
November, 2017
BIOSAMPLE
ASSAY
287 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
FAIRE-seq
Hi-C
RRBS
tissue
kidney
75
13
59
49
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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