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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
790
ChIP-seq
695
total RNA-seq
198
ATAC-seq
171
DNase-seq
161
single cell RNA-seq
23
WGBS
23
pCHi-C
16
snATAC-seq
small RNA-seq
12
Hi-C
9
RRBS
3
RNA microarray
3
snDrop-seq
2
FAIRE-seq
Assay category
856
Transcription
790
DNA binding
387
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
555
histone modification
554
histone
292
narrow histone mark
262
broad histone mark
158
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
456
February, 2021
239
October, 2019
193
May, 2020
170
August, 2021
159
June, 2019
137
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
73
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
41
May, 2022
40
May, 2024
30
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1464
bam
1385
bigWig
861
bed narrowPeak
786
tsv
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2104
Homo sapiens
Biosample type
2106
tissue
740
primary cell
569
cell line
388
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
pancreas
486
adipose tissue
358
liver
312
heart
261
brain
236
kidney
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
70
bone element
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
2039
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1459
GRCh38
1327
hg19
Lab
1874
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
6
inconsistent ontology term
2
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
assay_title!
small RNA-seq
files.file_type!
txt
organ_slims!
pancreas
stomach
BIOSAMPLE
ASSAY
2106 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
Hi-C
RRBS
RNA microarray
snDrop-seq
FAIRE-seq
tissue
adipose tissue
2
382
3
3
1
liver
145
167
20
2
1
3
1
1
1
kidney
27
75
13
51
6
1
1
1
heart left ventricle
35
3
2
3
18
4
1
1
1
left cardiac atrium
40
1
18
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