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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
684
ChIP-seq
211
ATAC-seq
177
DNase-seq
97
total RNA-seq
10
WGBS
6
single cell RNA-seq
4
FAIRE-seq
3
RRBS
Assay category
684
DNA binding
392
DNA accessibility
103
Transcription
13
DNA methylation
Target of assay
524
histone modification
523
histone
268
narrow histone mark
255
broad histone mark
93
transcription factor
67
control
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
August, 2017
163
June, 2019
151
October, 2019
93
May, 2019
72
October, 2018
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
48
December, 2017
44
May, 2022
40
May, 2024
27
May, 2020
26
November, 2018
20
November, 2019
17
October, 2017
8
February, 2021
7
December, 2018
7
January, 2019
7
July, 2019
6
April, 2018
6
September, 2017
2
July, 2018
2
March, 2020
1
March, 2019
Available data
1891
bam
1756
bigWig
1060
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
bedpe
1
tagAlign bed3+
Organism
1185
Homo sapiens
Biosample type
1192
tissue
615
primary cell
484
cell line
180
in vitro differentiated cells
4
stem cell
Organ
259
pancreas
196
brain
173
heart
153
kidney
135
liver
100
blood vessel
100
vasculature
92
limb
62
artery
53
musculature of body
47
adipose tissue
47
connective tissue
30
eye
27
nerve
24
spleen
18
ureter
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
1190
AMP
2
T1D
Genome assembly (visualization)
1014
GRCh38
902
hg19
Lab
1042
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
small RNA-seq
files.file_type!
bedpe
BIOSAMPLE
ASSAY
1192 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
single cell RNA-seq
FAIRE-seq
RRBS
tissue
islet of Langerhans
36
39
1
97
6
1
liver
99
20
2
1
1
kidney
20
64
13
1
body of pancreas
34
4
4
2
coronary artery
3
36
2
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