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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
590
ChIP-seq
43
ATAC-seq
16
WGBS
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
1
DNase-seq
Assay category
901
Transcription
590
DNA binding
48
DNA accessibility
16
DNA methylation
Target of assay
510
histone modification
509
histone
262
narrow histone mark
247
broad histone mark
80
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
170
May, 2020
156
October, 2019
153
August, 2017
116
July, 2018
93
May, 2019
65
April, 2019
57
November, 2017
47
July, 2019
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
20
May, 2022
19
November, 2019
14
November, 2018
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1891
bam
1756
bigWig
1060
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1549
Homo sapiens
Biosample type
1555
tissue
575
primary cell
520
cell line
245
in vitro differentiated cells
1
stem cell
Organ
473
connective tissue
415
adipose tissue
346
pancreas
257
liver
171
brain
129
heart
65
blood vessel
65
vasculature
58
bone element
55
limb
29
nerve
24
musculature of body
23
artery
22
kidney
15
spleen
1
pituitary gland
Project
1553
AMP
2
T1D
Genome assembly (visualization)
1495
GRCh38
1446
hg19
Lab
1494
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
small RNA-seq
files.file_type!
bed bed3+
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
1555 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
260
10
3
6
1
1
liver
147
80
20
bone tissue
58
left cardiac atrium
40
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