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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
544
total RNA-seq
217
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
24
pCHi-C
18
snATAC-seq
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
RNA microarray
2
FAIRE-seq
Assay category
907
DNA binding
718
Transcription
415
DNA accessibility
20
DNA methylation
12
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
74
October, 2018
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
March, 2020
40
May, 2024
40
November, 2019
38
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1367
bam
1265
bigWig
951
bed narrowPeak
577
tsv
559
bigBed narrowPeak
353
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
64
xls
62
txt
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2094
Homo sapiens
Biosample type
2103
tissue
770
primary cell
561
cell line
321
in vitro differentiated cells
10
stem cell
Organ
448
pancreas
352
liver
293
heart
287
kidney
254
brain
126
blood vessel
126
vasculature
111
limb
93
connective tissue
92
adipose tissue
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2033
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1346
GRCh38
1225
hg19
Lab
1803
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
small RNA-seq
lab.title!
Kyle Gaulton, UCSD
month_released!
February, 2021
July, 2019
BIOSAMPLE
ASSAY
2103 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
snATAC-seq
WGBS
Hi-C
RRBS
MeRIP-seq
RNA microarray
FAIRE-seq
tissue
islet of Langerhans
71
281
39
1
6
4
1
3
4
1
liver
145
165
20
2
1
3
1
1
kidney
27
49
75
13
59
6
1
heart left ventricle
35
1
3
18
1
1
left cardiac atrium
40
1
18
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