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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
small RNA-seq
15
RRBS
12
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
47
Transcription
27
DNA methylation
8
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
713
February, 2021
406
November, 2017
396
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
86
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
67
bigWig
64
bam
47
tsv
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
86
Homo sapiens
Biosample type
61
tissue
25
primary cell
Organ
24
heart
14
connective tissue
11
brain
11
epithelium
10
kidney
10
vasculature
9
adipose tissue
9
blood vessel
8
musculature of body
6
liver
5
limb
4
pancreas
3
artery
2
pericardium
1
eye
Project
86
AMP
Genome assembly (visualization)
69
hg19
61
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
small RNA-seq
files.file_type!
bed bed3+
month_released!
August, 2020
organ_slims!
thymus
BIOSAMPLE
ASSAY
86 results
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total RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
gastrocnemius medialis
4
omental fat pad
4
subcutaneous adipose tissue
4
heart
2
1
+ See 25 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
Purkinje cell
1
+ See 16 more…
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