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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
49
total RNA-seq
18
ChIP-seq
11
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
1
whole genome sequencing assay
Assay category
82
DNA accessibility
60
Transcription
18
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
154
August, 2021
14
May, 2023
2
March, 2019
Available data
78
bed narrowPeak
64
xls
57
txt
14
bigWig
tsv
3
hic
2
bedpe bed3+
1
bedpe
1
vcf
Organism
170
Homo sapiens
Biosample type
145
tissue
25
cell line
Organ
144
kidney
22
liver
3
pancreas
Project
170
AMP
Genome assembly (visualization)
76
GRCh38
18
hg19
Lab
2104
AMP-T2D consortium
318
Klaus Kaestner, Upenn
247
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
assay_title!
small RNA-seq
files.file_type!
bed broadPeak
tsv
BIOSAMPLE
ASSAY
170 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
kidney
75
49
11
6
1
islet of Langerhans
1
2
cell line
HepG2
18
2
1
1
HEK293T
2
Synthesized DNA
1
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