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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
total RNA-seq
5
RRBS
4
Hi-C
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
7
Transcription
6
DNA methylation
4
3D chromatin structure
2
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
8
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
66
bigWig
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
32
Homo sapiens
Biosample type
28
tissue
4
primary cell
Organ
723
pancreas
605
connective tissue
474
adipose tissue
368
epithelium
345
liver
198
heart
170
kidney
151
bone element
101
vasculature
99
blood vessel
79
brain
67
artery
32
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
9
hg19
5
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
small RNA-seq
files.file_type!
bed narrowPeak
bedpe bed3+
organ_slims!
skeleton
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
total RNA-seq
RRBS
Hi-C
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
1
4
1
1
1
gastrocnemius medialis
1
4
psoas muscle
2
1
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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