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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
17
total RNA-seq
4
ATAC-seq
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
48
DNA binding
20
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
31
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
27
November, 2017
13
July, 2019
12
February, 2020
11
October, 2019
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
239
bam
218
bigWig
bed narrowPeak
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
22
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
79
Homo sapiens
Biosample type
69
tissue
10
primary cell
Organ
730
pancreas
603
connective tissue
474
adipose tissue
373
epithelium
347
liver
201
heart
170
kidney
151
bone element
103
vasculature
101
blood vessel
79
brain
67
artery
34
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
19
hg19
12
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
small RNA-seq
files.file_type!
bed narrowPeak
bigBed narrowPeak
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
9
1
1
1
cingulate gyrus
7
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 24 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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