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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
29
ATAC-seq
19
total RNA-seq
8
snATAC-seq
4
pCHi-C
1
RRBS
Assay category
65
DNA binding
37
DNA accessibility
19
Transcription
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
7
control
4
histone
4
histone modification
4
narrow histone mark
Date released
31
February, 2023
27
December, 2018
21
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
3
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
Available data
87
bed narrowPeak
67
bam
61
bigWig
60
bigBed narrowPeak
60
fastq
5
tsv
4
bed bed3+
4
bed broadPeak
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
126
Homo sapiens
Biosample type
61
cell line
53
tissue
12
primary cell
Organ
937
pancreas
725
liver
672
connective tissue
502
epithelium
486
adipose tissue
362
heart
275
kidney
244
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
61
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
118
AMP
8
T1D
Genome assembly (visualization)
85
hg19
56
GRCh38
Lab
118
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
small RNA-seq
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
126 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
pCHi-C
RRBS
cell line
GM12878
60
1
tissue
islet of Langerhans
2
1
14
4
retina
15
3
pigmented layer of retina
12
2
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
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