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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
17
total RNA-seq
4
ATAC-seq
small RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
184
DNA binding
17
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
control
Date released
79
October, 2019
70
November, 2017
25
May, 2019
13
October, 2017
12
February, 2020
11
July, 2019
2
March, 2020
1
February, 2023
Available data
212
bigWig
209
bam
203
bed narrowPeak
127
bigBed narrowPeak
99
tagAlign
47
bed broadPeak
bigBed broadPeak
35
bed bed3+
19
tsv
16
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
213
Homo sapiens
Biosample type
209
tissue
4
primary cell
Organ
884
pancreas
637
connective tissue
617
liver
472
epithelium
462
adipose tissue
342
heart
263
kidney
213
brain
197
vasculature
196
blood vessel
159
bone element
128
artery
69
limb
63
blood
63
bodily fluid
56
eye
55
musculature of body
30
embryo
30
nerve
20
lung
16
skeleton
16
spleen
16
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
213
AMP
Genome assembly (visualization)
172
GRCh38
126
hg19
Lab
213
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
small RNA-seq
files.file_type!
bigBed broadPeak
target.investigated_as!
control
BIOSAMPLE
ASSAY
213 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
17
1
1
1
layer of hippocampus
20
substantia nigra
14
1
angular gyrus
14
caudate nucleus
13
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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