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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
pCHi-C
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
29
DNA binding
7
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
23
histone
23
histone modification
12
broad histone mark
11
narrow histone mark
6
control
Date released
26
August, 2017
8
July, 2019
6
March, 2020
4
October, 2019
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
66
bigWig
60
bed narrowPeak
55
bam
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
52
Homo sapiens
Biosample type
48
tissue
4
primary cell
Organ
797
pancreas
639
connective tissue
477
adipose tissue
430
liver
396
epithelium
262
heart
249
kidney
154
brain
151
bone element
118
vasculature
116
blood vessel
81
artery
47
musculature of body
38
limb
37
embryo
24
eye
20
lung
17
nerve
15
blood
15
bodily fluid
12
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
24
hg19
5
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
small RNA-seq
files.file_type!
bigBed narrowPeak
month_released!
February, 2023
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
islet of Langerhans
4
muscle of leg
1
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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