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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
21
ChIP-seq
6
single cell RNA-seq
3
Hi-C
1
WGBS
1
pCHi-C
Assay category
35
DNA accessibility
21
DNA binding
6
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
18
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
February, 2021
6
August, 2021
February, 2020
3
March, 2020
1
July, 2019
Available data
117
bed narrowPeak
114
bam
bigWig
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
13
tsv
11
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
67
Homo sapiens
Biosample type
60
tissue
7
primary cell
Organ
316
pancreas
217
epithelium
215
kidney
165
liver
156
heart
107
connective tissue
68
vasculature
67
blood vessel
64
adipose tissue
54
eye
52
brain
44
artery
26
musculature of body
22
limb
20
lung
14
blood
14
bodily fluid
11
nerve
9
bone element
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
67
AMP
Genome assembly (visualization)
35
GRCh38
3
hg19
Lab
67
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
small RNA-seq
files.file_type!
bigWig
month_released!
February, 2020
February, 2021
BIOSAMPLE
ASSAY
67 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
tissue
coronary artery
35
2
aorta
2
4
1
1
1
tibial artery
5
thoracic aorta
4
ascending aorta
3
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primary cell
endothelial cell of umbilical vein
5
2
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