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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
84
RNA microarray
55
ATAC-seq
20
ChIP-seq
7
total RNA-seq
4
pCHi-C
3
Hi-C
2
RRBS
2
WGBS
Assay category
100
Transcription
55
DNA accessibility
20
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
20
control
Date released
102
February, 2021
92
August, 2021
44
February, 2023
10
April, 2019
6
May, 2019
5
March, 2020
4
July, 2019
3
February, 2020
2
June, 2019
1
May, 2021
1
October, 2019
Available data
bigWig
276
bam
225
tsv
199
bed narrowPeak
94
bigBed narrowPeak
88
txt
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
4
bed bed3
3
bedpe bed3+
3
hic
Organism
270
Homo sapiens
Biosample type
256
tissue
10
cell line
4
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
269
AMP
1
T1D
Genome assembly (visualization)
51
GRCh38
25
hg19
Lab
269
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
assay_title!
small RNA-seq
files.file_type!
bigWig
organ_slims!
nerve
BIOSAMPLE
ASSAY
270 results
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Clear Filters
single cell RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
RRBS
WGBS
tissue
bone element
84
coronary artery
35
2
1
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
+ See 23 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
2
1
megakaryocyte
1
See all biosamples
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