Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
56
ChIP-seq
6
ATAC-seq
6
WGBS
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
398
Transcription
56
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
45
August, 2017
18
October, 2018
9
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
422
bam
405
bigWig
398
tsv
27
fastq
8
bed narrowPeak
8
tagAlign
5
bigBed narrowPeak
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
470
Homo sapiens
Biosample type
469
tissue
1
in vitro differentiated cells
1
primary cell
Organ
918
pancreas
641
connective tissue
492
epithelium
471
adipose tissue
418
liver
372
heart
342
kidney
279
brain
224
vasculature
219
blood vessel
159
bone element
136
artery
122
limb
92
musculature of body
60
eye
43
nerve
24
embryo
20
lung
20
vein
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
471
AMP
Genome assembly (visualization)
406
hg19
404
GRCh38
Lab
471
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
small RNA-seq
files.file_type!
hic
month_released!
December, 2017
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
471 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
2
visceral abdominal adipose tissue
3
+ See 1 more…
in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
See all biosamples
Download