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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
20
Transcription
2
DNA methylation
Target of assay
3
control
Date released
12
February, 2020
9
July, 2019
2
March, 2020
1
October, 2019
Available data
239
bam
218
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
22
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
24
Homo sapiens
Biosample type
20
tissue
4
primary cell
Organ
478
connective tissue
420
pancreas
400
adipose tissue
175
heart
165
liver
162
epithelium
70
vasculature
69
blood vessel
58
artery
58
bone element
27
kidney
24
brain
14
embryo
11
musculature of body
8
limb
6
eye
5
nerve
3
spleen
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
24
AMP
Genome assembly (visualization)
10
hg19
8
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
small RNA-seq
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
24 results
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total RNA-seq
single cell RNA-seq
RRBS
pCHi-C
tissue
Ammon's horn
1
1
brain
1
1
cerebellum
2
frontal cortex
2
amygdala
1
+ See 11 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
choroid plexus epithelial cell
1
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