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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
7
DNase-seq
2
ATAC-seq
1
Hi-C
Assay category
12
DNA binding
9
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
Date released
12
August, 2017
4
June, 2019
2
November, 2018
2
October, 2019
1
March, 2019
1
October, 2017
Available data
687
bam
621
bigWig
471
fastq
415
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
16
Homo sapiens
Biosample type
20
tissue
2
cell line
Organ
78
kidney
64
liver
50
brain
46
musculature of body
36
limb
30
heart
24
epithelium
22
pancreas
19
vasculature
18
ureter
15
blood vessel
11
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
22
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
20
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent assembly
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
22 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
tissue
islet of Langerhans
6
2
pancreas
6
2
body of pancreas
4
cell line
Panc1
1
1
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