Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
5
DNase-seq
Assay category
46
DNA binding
5
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
broad histone mark
6
narrow histone mark
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
46
November, 2017
3
November, 2018
2
June, 2019
Available data
592
bam
533
bigWig
383
fastq
356
bed narrowPeak
282
bigBed narrowPeak
171
tsv
68
tagAlign
51
bed broadPeak
51
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
51
Homo sapiens
Biosample type
46
cell line
3
tissue
2
primary cell
Organ
78
kidney
51
liver
40
brain
38
musculature of body
36
limb
30
heart
18
epithelium
18
ureter
13
pancreas
13
vasculature
10
blood vessel
10
connective tissue
4
artery
4
eye
3
adipose tissue
2
nerve
2
vein
1
spleen
Project
51
AMP
Genome assembly (visualization)
51
hg19
39
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
5
inconsistent control read length
assay_title!
small RNA-seq
target.investigated_as!
RNA binding protein
broad histone mark
BIOSAMPLE
ASSAY
51 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
cell line
HepG2
46
tissue
liver
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
Download