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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
32
DNase-seq
5
total RNA-seq
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
172
DNA binding
35
DNA accessibility
8
Transcription
3
3D chromatin structure
Target of assay
166
histone
166
histone modification
106
narrow histone mark
60
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
76
October, 2019
66
November, 2017
30
June, 2019
25
May, 2019
12
July, 2019
7
October, 2017
2
November, 2018
Available data
239
bam
218
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
22
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
218
Homo sapiens
Biosample type
198
tissue
20
primary cell
Organ
619
liver
567
connective tissue
549
pancreas
422
adipose tissue
240
epithelium
223
heart
218
brain
155
vasculature
150
blood vessel
130
kidney
91
limb
85
artery
66
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
218
AMP
Genome assembly (visualization)
210
GRCh38
155
hg19
Lab
218
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
small RNA-seq
files.file_type!
xls
month_released!
September, 2018
BIOSAMPLE
ASSAY
218 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
layer of hippocampus
17
angular gyrus
14
temporal lobe
13
1
caudate nucleus
12
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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