Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
49
ATAC-seq
47
WGBS
40
ChIP-seq
6
MeRIP-seq
3
Hi-C
Assay category
53
Transcription
49
DNA accessibility
47
DNA methylation
40
DNA binding
3
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
3
control
3
nucleotide modification
Date released
80
May, 2022
40
May, 2024
37
February, 2023
19
September, 2020
7
August, 2020
6
February, 2021
6
November, 2020
3
October, 2022
Available data
80
zippedFastqFolder
69
fastq
50
bigWig
40
bed narrowPeak
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
198
Homo sapiens
Biosample type
152
primary cell
40
tissue
6
cell line
Organ
221
pancreas
191
kidney
158
epithelium
71
liver
40
heart
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
152
HPAP
46
AMP
Genome assembly (visualization)
50
GRCh38
3
hg19
Lab
AMP-T2D consortium
152
Klaus Kaestner, Upenn
40
Patrick T. Ellinor, Broad
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
3
audit script error
assay_title!
small RNA-seq
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
198 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
WGBS
ChIP-seq
MeRIP-seq
Hi-C
primary cell
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
pancreatic acinar cell
4
1
tissue
left cardiac atrium
40
cell line
EndoC_BH1
6
Download