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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
44
total RNA-seq
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
80
DNA binding
47
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
17
control
6
transcription factor
4
RNA binding protein
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
103
February, 2023
94
December, 2017
90
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
143
bam
132
bigWig
72
bed narrowPeak
66
bigBed narrowPeak
47
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
170
Homo sapiens
Biosample type
141
tissue
29
primary cell
Organ
81
heart
33
kidney
15
connective tissue
14
brain
13
epithelium
12
vasculature
11
blood vessel
9
adipose tissue
8
musculature of body
7
liver
5
limb
4
pancreas
3
artery
2
pericardium
1
eye
Project
170
AMP
Genome assembly (visualization)
138
hg19
125
GRCh38
Lab
170
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
small RNA-seq
month_released!
December, 2019
BIOSAMPLE
ASSAY
170 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
35
2
1
4
2
kidney
23
1
1
heart right ventricle
13
2
heart
9
2
1
gastrocnemius medialis
4
+ See 25 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
Purkinje cell
1
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