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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
single cell RNA-seq
14
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
57
Transcription
14
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
47
September, 2023
32
August, 2021
2
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
81
Homo sapiens
Biosample type
51
tissue
30
cell line
Organ
49
kidney
27
liver
4
pancreas
Project
47
KPMP
34
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
3559
AMP-T2D consortium
335
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Bing Ren, UCSD
18
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
5
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
small RNA-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
81 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
tissue
kidney
47
islet of Langerhans
1
2
1
cell line
HepG2
14
9
2
1
1
HEK293T
2
Synthesized DNA
1
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