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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
5
RRBS
4
total RNA-seq
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
6
3D chromatin structure
6
DNA methylation
5
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
8
July, 2019
7
May, 2019
5
March, 2020
February, 2020
2
May, 2022
1
January, 2018
Available data
66
bigWig
60
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
5
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
92
Homo sapiens
Biosample type
79
tissue
13
primary cell
Organ
943
pancreas
679
connective tissue
518
epithelium
486
adipose tissue
472
liver
389
heart
353
kidney
227
vasculature
224
blood vessel
179
brain
159
bone element
139
artery
119
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
71
hg19
51
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
small RNA-seq
month_released!
February, 2020
November, 2017
organ_slims!
vein
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
psoas muscle
2
2
1
gastrocnemius medialis
4
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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