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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
34
DNase-seq
6
total RNA-seq
4
Hi-C
1
ATAC-seq
1
WGBS
Assay category
43
DNA binding
35
DNA accessibility
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
11
narrow histone mark
Date released
43
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
2
February, 2020
Available data
82
bam
70
bigWig
65
bed narrowPeak
64
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
89
Homo sapiens
Biosample type
89
tissue
Organ
925
pancreas
788
liver
681
connective tissue
505
epithelium
488
adipose tissue
392
heart
353
kidney
282
brain
236
vasculature
230
blood vessel
159
bone element
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
69
GRCh38
69
hg19
Lab
89
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
small RNA-seq
month_released!
September, 2020
organ_slims!
artery
skeleton
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
35
2
5
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
forelimb muscle
1
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